关于这个参考书目
这是Active Inference Meta-Analysis项目的完整结构化输出。参考文献包括从手稿来源中精选的71篇参考文献，加上完整的语料库分析：领域增长指标、来自LLM提取断言的假设证据分数、引用网络分析、NMF主题建模、子领域分类、语料覆盖统计以及项目质量和可重复性数据。所有BibTeX源文件、全部输出数据文件和编译的手稿均可在GitHub上获取。
此页面由机器翻译成中文。 查看英文原版。
寻求Canonical文献、证据评分和Active Inference和自由能原则研究领域结构化分析的研究人员。
参考文献
精选的参考文献和主动推理元分析项目中的结构化输出——817篇论文，8个假设，5个主题，8个子领域，以及71个精选的参考文献。
这是页面呈现的Active Inference元分析项目的完全结构化输出——这是一个跨越2005年至2026年间Active Inference和自由能原则文献库的817篇论文的计算性元分析。该项目从arXiv、Semantic Scholar和OpenAlex多源检索；使用LLM提取断言并转化为Nanopublications；根据引用权重评分假设；进行非负矩阵分解主题建模；以及子领域分类。所有71个精选参考文献都以完整引文信息和DOI链接列出。
覆盖范围和内容
《该参考文献涵盖了关于自由能原则的基础性工作（Friston 2006，2010），主动推理教科书（Parr，Pezzulo & Friston 2022），离散和连续状态空间形式化的方法论进展，深度主动推理，主动推理在机器人和语言中的应用，以及围绕马尔可夫屏蔽和FEP科学地位的批判性讨论。还包括计算基础设施参考：纳米出版物、知识图谱、Semantic Scholar 和 OpenAlex 平台，以及基于LLM 的科学研究信息提取。》
视野概览
{Active Inference} 文献：817 篇论文 (2005–2026)
这个语料跨越了Active Inference和自由能量原则研究的两个年代，从arXiv、Semantic Scholar和OpenAlex获取。
Growth metrics
Total papers: 817
CAGR: 20.4%
Doubling time: 2.8 years
Peak year: 2025 (123 papers)
Cumulative (2026): 817
Papers per year
Corpus评估
819 篇论文索引和评估
全文文献 Corpus 的覆盖率和可用性统计。
Coverage
Abstracts: 96.5%
Open access: 94.6%
Full-text PDF: 87.8%
Full-text sources
arxiv: 485
publisher: 157
none: 100
repository: 67
openalex: 10
Identifier coverage
doi: 420
arxiv_id: 485
s2_id: 0
openalex_id: 334
假设证据
8个核心假设在文献中评估
每个假设都使用来自LLM提取断言的引用加权证据进行评分（纳米出版物）。评分反映了语料库中找到的综合证据支持。
Morphogenesis
24 supporting assertions
Active Inference Optimality
291 supporting, 6 neutral, 2 contradicting assertions
Predictive Coding
233 supporting, 24 neutral, 1 contradicting assertions
Clinical Utility
23 supporting, 2 neutral assertions
Scalability
108 supporting, 13 neutral assertions
Language & Active Inference
31 supporting, 3 neutral assertions
Markov Blanket Realism
12 supporting, 2 neutral, 4 contradicting assertions
FEP Universality
281 supporting, 429 neutral, 1 contradicting assertions
子领域分布
corpus」跨{domain}分类为{8}个领域
论文根据标题和摘要中的关键词规则被分类为8个子领域类别。
Total classified assignments: 817
主题景观
5个主题通过NMF提取
非負矩陣因子化（NMF）被應用到論文標題和摘要的TF-IDF向量上，揭示了文學中有五個主題集群。
Topic 1
energy (0.063), free (0.059), systems (0.05), states (0.048), fep (0.046)
Topic 2
agent (0.107), agents (0.05), environment (0.043), model (0.035), behavior (0.028)
Topic 3
predictive (0.061), cognitive (0.055), brain (0.046), processing (0.038), cognition (0.036)
Topic 4
active (0.06), inference (0.057), decision (0.041), agents (0.039), aif (0.036)
Topic 5
model (0.057), learning (0.052), data (0.036), state (0.033), inference (0.032)
citation网络
817 节点，2176 边，29323 引用
引用图从论文参考文献列表中构建。PageRank、hub和authority分数识别网络中最重要的一篇论文。
Network metrics
Nodes: 817
Edges: 2176
Density: 0.003264
Avg degree: 2.7
Top papers by PageRank
- doi:10.1371/journal.pcbi.1000211 (0.0717)
- doi:10.1371/journal.pone.0006421 (0.0244)
- doi:10.1155/2010/621670 (0.0223)
- doi:10.1371/journal.pcbi.1002327 (0.0197)
- doi:10.1155/2012/937860 (0.0193)
全 bibliographie
71 精选参考文献在 67 部分
每条引用都链接到其DOI或来源URL。BibTeX源码可在GitHub上获取。
Foundational FEP
- The free-energy principle: a unified brain theory? Nature Reviews Neuroscience, 11, (2), 127--138. Nature Publishing Group · DOI: 10.1038/nrn2787
- A free energy principle for the brain Journal of Physiology-Paris, 100, (1-3), 70--87. Elsevier · DOI: 10.1016/j.jphysparis.2006.10.001
Active Inference textbook
- Active Inference: The Free Energy Principle in Mind, Brain, and Behavior MIT Press
Da Costa et al. on active inference
- Active inference on discrete state-spaces: A synthesis Journal of Mathematical Psychology, 99, 102447. Elsevier · DOI: 10.1016/j.jmp.2020.102447
Sajid et al. review
- Active inference: demystified and compared Neural Computation, 33, (3), 674--712. MIT Press · DOI: 10.1162/neco_a_01357
Smith et al. computational psychiatry
- A step-by-step tutorial on active inference and its application to empirical data Journal of Mathematical Psychology, 107, 102632. Elsevier · DOI: 10.1016/j.jmp.2021.102632
Deep active inference
- Deep active inference agents using Monte-Carlo methods Advances in Neural Information Processing Systems, 33, 11662--11675.
Champion et al. tree search
- Realizing active inference in variational message passing: The outcome-blind fixation of belief Neural Computation, 33, (10), 2762--2826. MIT Press · DOI: 10.1162/neco_a_01422
Nanopublications
- Anatomy of a nanopublication Information Services & Use, 30, (1-2), 51--56. IOS Press · DOI: 10.3233/ISU-2010-0613
- Decentralized provenance-aware publishing with nanopublications PeerJ Computer Science, 2, e78. PeerJ Inc. · DOI: 10.7717/peerj-cs.78
- Trusty URIs: Verifiable, Immutable, and Permanent Digital Artifacts for Linked Data The Semantic Web--ISWC 2014, 395--410. Springer · DOI: 10.1007/978-3-319-11964-9_25
pymdp
- pymdp: A Python library for active inference in discrete state spaces Journal of Open Source Software, 7, (73), 4098. The Open Journal · DOI: 10.21105/joss.04098
Semantic Scholar
- The Semantic Scholar Open Data Platform arXiv preprint arXiv:2301.10140.
OpenAlex
- OpenAlex: A fully-open index of scholarly works, authors, venues, institutions, and concepts arXiv preprint arXiv:2205.01833.
Markov blanket debate
- The Emperor's New Markov Blankets Behavioral and Brain Sciences, 45, e183. Cambridge University Press · DOI: 10.1017/S0140525X21002351
Predictive processing
- Whatever next? Predictive brains, situated agents, and the future of cognitive science Behavioral and Brain Sciences, 36, (3), 181--204. Cambridge University Press · DOI: 10.1017/S0140525X12000477
Bayesian mechanics
- On Bayesian mechanics: a physics of and by beliefs Interface Focus, 13, (3), 20220029. The Royal Society · DOI: 10.1098/rsfs.2022.0029
LLM + KG 2025 systematic reviews
- Combining Knowledge Graphs and Large Language Models: A Systematic Literature Review IEEE Access. IEEE
- Unifying large language models and knowledge graphs: A roadmap IEEE Transactions on Knowledge and Data Engineering. IEEE
Active inference and artificial reasoning (replaces fabricated heins2024active)
- Active inference and artificial reasoning arXiv preprint arXiv:2512.21129. DOI: 10.48550/arXiv.2512.21129
AXIOM: AIF agents learning games in minutes
- AXIOM: Learning to Play Games in Minutes with Expanding Object-Centric Models arXiv preprint arXiv:2505.24784.
Collective behavior from surprise minimization
- Collective behavior from surprise minimization Proceedings of the National Academy of Sciences, 121, (17), e2320239121. DOI: 10.1073/pnas.2320239121
Millidge retrospective on Active Inference
The Missing Reward: AIF + LLMs
- The Missing Reward: Active Inference in the Era of Experience arXiv preprint arXiv:2508.05619. DOI: 10.48550/arXiv.2508.05619
Morphogenesis and FEP
- Morphogenesis as Bayesian inference: A variational approach to pattern formation and body-plan diversity in biology Physics of Life Reviews, 33, 88--108. Elsevier · DOI: 10.1016/j.plrev.2019.06.001
Active inference for language
- Generative models, linguistic communication and active inference Neuroscience & Biobehavioral Reviews, 118, 42--64. Elsevier · DOI: 10.1016/j.neubiorev.2020.07.005
Non-negative Matrix Factorization
- Learning the parts of objects by non-negative matrix factorization Nature, 401, (6755), 788--791. Nature Publishing Group · DOI: 10.1038/44565
Vector space model / TF-IDF
- A vector space model for automatic indexing Communications of the ACM, 18, (11), 613--620. ACM · DOI: 10.1145/361219.361220
Greedy modularity community detection (Clauset-Newman-Moore)
- Finding community structure in very large networks Physical Review E, 70, (6), 066111. American Physical Society · DOI: 10.1103/PhysRevE.70.066111
Active inference for robotics
- Active inference in robotics and artificial agents: Survey and challenges arXiv preprint arXiv:2112.01871.
Technological approach to morphogenesis
- Technological approach to mind everywhere: An experimentally-grounded framework for understanding diverse bodies and minds Frontiers in Systems Neuroscience, 16, 768201. Frontiers · DOI: 10.3389/fnsys.2022.768201
Active Inference textbook (Friston 2017)
- Active inference: A process theory Neural Computation, 29, (1), 1--49. MIT Press · DOI: 10.1162/NECO_a_00912
Deep active inference survey
- Understanding the origin of information-seeking exploration in probabilistic objectives for control arXiv preprint arXiv:2103.06859.
Cpp-AIF: C++ active inference for POMDPs
- A C++ Implementation of Active Inference for POMDPs Neurocomputing, 562, 126888. Elsevier · DOI: 10.1016/j.neucom.2023.126888
Deep Active Inference (Millidge)
- Deep Active Inference as Variational Policy Gradients Journal of Mathematical Psychology, 96, 102348. Elsevier · DOI: 10.1016/j.jmp.2020.102348
Predictive coding approximates backprop
- Predictive coding approximates backprop along arbitrary computation graphs Neural Computation, 34, (6), 1329--1368. MIT Press · DOI: 10.1162/neco_a_01497
Action-oriented predictive processing
- Learning action-oriented models through active inference PLoS Computational Biology, 16, (4), e1007805. PLOS · DOI: 10.1371/journal.pcbi.1007805
Ollama local LLM inference
Prior systematic literature analysis
- The Free Energy Principle & Active Inference: a Systematic Literature Analysis Zenodo · DOI: 10.5281/zenodo.7449368
Visualization standards
- Points of view: Color blindness Nature Methods, 8, (6), 441. Nature Publishing Group · DOI: 10.1038/nmeth.1618
Hohwy - The Predictive Mind
- The Predictive Mind Oxford University Press · DOI: 10.1093/acprof:oso/9780199682737.001.0001
Ramstead et al. - Answering Schr\"odinger's question
- Answering Schr"odinger's question: A free-energy formulation Physics of Life Reviews, 24, 1--16. Elsevier · DOI: 10.1016/j.plrev.2017.09.001
Pezzulo et al. - Active inference and robotics
- Active Inference, homeostatic regulation and adaptive behavioural control Progress in Neurobiology, 134, 17--35. Elsevier · DOI: 10.1016/j.pneurobio.2015.09.001
HITS Centrality
- Authoritative sources in a hyperlinked environment Journal of the ACM (JACM), 46, (5), 604--632. ACM New York, NY, USA · DOI: 10.1145/324133.324140
LeCun EBM tutorial
- A tutorial on energy-based learning Predicting Structured Data, 191--246. MIT Press
Contrastive divergence
- Training products of experts by minimizing contrastive divergence Neural Computation, 14, (8), 1771--1800. MIT Press · DOI: 10.1162/089976602760128018
Helmholtz machine
- The Helmholtz machine Neural Computation, 7, (5), 889--904. MIT Press · DOI: 10.1162/neco.1995.7.5.889
Variational autoencoder
- Auto-encoding variational Bayes Proceedings of the 2nd International Conference on Learning Representations (ICLR).
Metacognitive AIF and consciousness
- How do inner screens enable imaginative experience? A metacognitive active inference account Neuroscience of Consciousness, 2025, (1), niaf009. Oxford University Press · DOI: 10.1093/nc/niaf009
Free Energy Projective Simulation
- Free Energy Projective Simulation (FEPS): Active Inference with Interpretable Policy Graphs Workshop on Bridging the Gap Between Practice and Theory in Deep Learning, ICML 2024.
AIF for smart building energy control
- Active Inference for Energy Control and Planning under Partial Observability arXiv preprint arXiv:2503.07772. DOI: 10.48550/arXiv.2503.07772
nanopub-js JavaScript library
Publication bias
- Publication decisions and their possible effects on inferences drawn from tests of significance—or vice versa Journal of the American Statistical Association, 54, (285), 30--34. Taylor & Francis · DOI: 10.1080/01621459.1959.10501497
Falsifiability critique of the FEP
- Free energy: a user's guide Biology & Philosophy, 36, (2), 1--35. Springer · DOI: 10.1007/s10539-021-09788-0
Predictive coding foundational paper: Rao & Ballard 1999
- Predictive coding in the visual cortex: a functional interpretation of some extra-classical receptive-field effects Nature Neuroscience, 2, (1), 79--87. Nature Publishing Group · DOI: 10.1038/4580
LLM extraction benchmarking survey
- A survey of scientific information extraction with large language models arXiv preprint arXiv:2401.01512.
RAG-Knowledge Graph convergence survey
- A survey on RAG meeting LLMs: towards Retrieval-Augmented large language model arXiv preprint arXiv:2405.06211.
Discovery Engine and Knowledge Synthesis
- The Discovery Engine: A Framework for AI-Driven Synthesis and Navigation of Scientific Knowledge Landscapes arXiv preprint arXiv:2505.17500. DOI: 10.48550/arXiv.2505.17500
Namjoshi 2026 Textbook
- Fundamentals of Active Inference: Principles, Algorithms, and Applications of the Free Energy Principle for Engineers MIT Press
Namjoshi AIF FEP DB
- aif-fep-db: A database of publications related to active inference and the free energy principle
MDPI Entropy ActiveInference.jl
- Introducing ActiveInference.jl: A Julia Library for Simulation and Parameter Estimation with Active Inference Models Entropy, 27, (1), 62. MDPI · DOI: 10.3390/e27010062
ResNei: Research Neighbourhood
- ResNei: Solution Design Document DOI: 10.5281/zenodo.16753709
FAIR Data Principles
- The FAIR Guiding Principles for Scientific Data Management and Stewardship Scientific Data, 3, 160018. Nature Publishing Group · DOI: 10.1038/sdata.2016.18
Decentralized Science
Cognitive Load Theory
- Cognitive Load Theory Explorations in the Learning Sciences, Instructional Systems and Performance Technologies. Springer · DOI: 10.1007/978-1-4419-8126-4
Citizen Science
- Citizen Science: A Developing Tool for Expanding Science Knowledge and Scientific Literacy BioScience, 59, (11), 977--984. Oxford University Press · DOI: 10.1525/bio.2009.59.11.9
Universal Design for Learning
- Universal Design for Learning Journal of Special Education Technology, 15, (1), 67--70. DOI: 10.1177/016264340001500108
Article / manuscript describing the template/ system
- A template/ approach to Reproducible Generative Research: Architecture and Ergonomics from Configuration through Publication Zenodo. DOI: 10.5281/zenodo.19139090
Software framework (kept as @misc — plainnat.bst does not define @software)
- docxology/template DOI: 10.5281/zenodo.19139089
项目质量
可重复性和验证
元分析管道经过全面测试和验证。所有闸门通过后才会发布任何输出。
Test suite
Tests passed: 558 / 558
Coverage: 94.8%
Pipeline stages: 7
Validation
All checks passed: Yes
Total checks: 4
Pipeline duration: 472.438
Project links
关键表面
综述一览
meta分析项目
全元分析代码库、管道和手稿源。
BibTeX源
canonical references.bib 文件那驱动了这一页。
发表的论文
编译完成的包含完整结果、图表和分析的文档。
相关资源
此页的公共链接
Start repository
Audience: Learner
Learning repository for getting started with Active Inference materials and pathways.
learningstart-repo
Ecosystem shortlink
Audience: Researcher
Public ecosystem shortlink for Institute context, projects, activities, and conceptual maps.
researchecosystem
Active Inference Journal repository
Audience: Researcher
Research and publication-oriented repository for the Active Inference Journal.
researchjournal
Active Inference livestream introduction
Audience: Learner
Public livestream surfaced from the official site.
videointrolearning
FEP and Active Inference papers repository
Audience: Researcher
Continuously updated bibliography of Free Energy Principle and active inference papers, maintained in the open on GitHub.
papersresearchfep
Ramstead et al. Bayesian Mechanics precis (arXiv)
Audience: Researcher
Precis of Bayesian mechanics (Ramstead et al., 2022), summarising the physics-of-beliefs framing behind the Free Energy Principle.
arxivresearchactive-inference
Active inference on discrete state-spaces: A synthesis (Da Costa et al., arXiv)
Audience: Researcher
Synthesis paper on active inference over discrete state-spaces (Da Costa et al., 2020); a standard reference for the discrete formulation.
arxivresearchfoundations
Active Inference & Behavior Engineering for Teams (Vyatkin, 2020)
Audience: Researcher
Preprint (2020) by Vyatkin et al., archived on Zenodo.
zenodoresearch
Narrative Information Management (Cordes, 2021)
Audience: Researcher
Preprint (2021) by Cordes et al., archived on Zenodo.
zenodoresearch
Active Inference in Modeling Conflict (David, 2021)
Audience: Researcher
Preprint (2021) by David et al., archived on Zenodo.
zenodoresearch
Transcript of: Karl Friston, 1st Applied Active Inference Symposium (Friston, 2021)
Audience: Researcher
Transcript (2021) by Friston et al., archived on Zenodo.
zenodoresearch
Predictive Processing Interpretation of the Mirror Test (O'Connor, 2022)
Audience: Researcher
Journal article (2022) by O'Connor et al., archived on Zenodo.
zenodoresearch
仓库
相关开源仓库
act_inf_metaanalysis
Audience: Researcher
Computational meta-analysis of Active Inference literature with nanopublication and knowledge-graph outputs.
researchknowledgetex